R for
Authoring!!

OOH Session #34…
…diagrams

Open Office Hours
(July 16, 2024)

  • Recap session #33       ↔︎️
  • Focal issue:
  • Shared problem-solving

Recap of Session #33:

📜 apaquarto author visit ✍️

---
title: "Using Quarto to Generate Documents in APA Style (7th Edition)"
# If blank, the running header is the title in upper case.
shorttitle: "Template for the apaquarto Extension"
# Set names and affiliations.
# It is nice to specify everyone's orcid, if possible.
# There can be only one corresponding author, but declaring one is optional.
author:
  - name: Ana Fulano
    corresponding: true
    orcid: 0000-0000-0000-0001
    email: sm@example.org
    url: https://example.org/
    # Roles are optional. 
    # Select from the CRediT: Contributor Roles Taxonomy https://credit.niso.org/
    # conceptualization, data curation, formal Analysis, funding acquisition, investigation, 
    # methodology, project administration, resources, software, supervision, validation, 
    # visualization, writing, editing
    roles:
      - conceptualization
      - writing
    affiliations:
      - id: id1
        name: "Ana and Blanca's University"
        group: Clinical Psychology Program
        department: Department of Psychology
        address: 1234 Capital St.
        city: Albany
        region: NY
        country: USA
        postal-code: 12084-1234
  - name: Blanca Zutano
    orcid: 0000-0000-0000-0002
    roles:
      - project administration
      - formal analysis
    affiliations: 
      - ref: id1
  - name: Carina Mengano
    orcid: 0000-0000-0000-0003
    deceased: true
    roles:
      - formal analysis
      - writing
    affiliations:
      - name: "Carina's Primary Affiliation"
      - name: "Carina's Secondary Affiliation"
    # Because Dolorita is unaffiliated, specify her city instead
  - name: 
      - given: Dolorita C.
        family: Perengano
    orcid: 0000-0000-0000-0004
    roles:
      - writing
      - methodology
      - formal analysis
    # List city and region/state for unaffiliated authors
    affiliations:
      - city: Buffalo
        region: NY
author-note:
  status-changes: 
    # Example: [Author name] is now at [affiliation].
    affiliation-change: Carina Mengano is now at Generic University.
    # Example: [Author name] is deceased.
    deceased: ~
  # Disclosures condensed to one paragraph, but you can start a field with two line breaks to break them up: \n\nNew Paragraph
  disclosures:
    # Example: This study was registered at X (Identifier Y).
    study-registration: ~
    # Acknowledge and cite data/materials to be shared.
    data-sharing: ~
    # Example: This article is based on data published in [Reference].
    # Example: This article is based on the dissertation completed by [citation].  
    related-report: ~
    # Example: [Author name] has been a paid consultant for Corporation X, which funded this study.
    conflict-of-interest: The authors have no conflicts of interest to disclose.
    # Example: This study was supported by Grant [Grant Number] from [Funding Source].
    financial-support: ~
    # Example: The authors are grateful to [Person] for [Reason].
    gratitude: ~
    # Example. Because the authors are equal contributors, order of authorship was determined by a fair coin toss.
    authorship-agreements: ~
abstract: "This document is a template demonstrating the apaquarto format."
# Put as many keywords at you like, separated by commmas (e.g., [reliability, validity, generalizability])
keywords: [keyword1, keyword2, keyword3]
# If true, tables and figures are mingled with the text instead of listed at the end of the document.
floatsintext: true
# Numbered lines (.pdf and .docx only)
numbered-lines: false
# File with references
bibliography: bibliography.bib
# Suppress title page
suppress-title-page: false
# Link citations to references
link-citations: true
# Masks references that appear in the masked-citations list
mask: false
masked-citations:
  - schneider2012cattell
  - schneider2015intelligence
# Language options. See https://quarto.org/docs/authoring/language.html
lang: en
language:
  citation-last-author-separator: "and"
  citation-masked-author: "Masked Citation"
  citation-masked-date: "n.d."
  citation-masked-title: "Masked Title"
  email: "Email"
  title-block-author-note: "Author Note"
  title-block-correspondence-note: "Correspondence concerning this article should be addressed to"
  title-block-role-introduction: "Author roles were classified using the Contributor Role Taxonomy (CRediT; https://credit.niso.org/) as follows:"
  references-meta-analysis: "References marked with an asterisk indicate studies included in the meta-analysis."
format:
  apaquarto-docx: default
  apaquarto-html: default
  apaquarto-typst: 
    keep-typ: true
  apaquarto-pdf:
    # Can be jou (journal), man (manuscript), stu (student), or doc (document)
    documentmode: man
    keep-tex: true
---
1
First encountered (topmost) format will render if using the Studio IDE execution “buttons”

Today:

Diagrams ⤴️⤵️

%% Mermaid:

flowchart TD
  A[Hard edge] --> B(Round edge)                                       
  B --> C{Decision}                                                    
  C --> D{{Result one}}
  C --> E[("Love it <br/> #10084;")]

  style C fill:#f9f,stroke:#333,stroke-width:4px

%% Mermaid:

flowchart TD
  A[Hard edge] --> B(Round edge)                                       
  B --> C{Decision}                                                    
  C --> D{{Result one}}
  C --> E[("Love it <br/> #10084;")]

  style C fill:#f9f,stroke:#333,stroke-width:4px



// Graphviz:

graph G {
  layout=neato
  run -- intr;
  intr -- runbl;
  runbl -- run;
  run -- kernel;
  kernel -- zombie;
  kernel -- sleep;
  kernel -- runmem;
  sleep -- swap;
  swap -- runswap;
  runswap -- new;
  runswap -- runmem;
  new -- runmem;
  sleep -- runmem;
}

G run run intr intr run--intr kernel kernel run--kernel runbl runbl intr--runbl runbl--run zombie zombie kernel--zombie sleep sleep kernel--sleep runmem runmem kernel--runmem sleep--runmem swap swap sleep--swap runswap runswap swap--runswap runswap--runmem new new runswap--new new--runmem

Session Info (July 16, 2024) Rendering:

R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] fontawesome_0.5.2

loaded via a namespace (and not attached):
 [1] lubridate_1.9.3   emo_0.0.0.9000    digest_0.6.31     crayon_1.5.2     
 [5] assertthat_0.2.1  lifecycle_1.0.4   jsonlite_1.8.8    magrittr_2.0.3   
 [9] evaluate_0.23     stringi_1.7.12    rlang_1.1.3       cli_3.6.0        
[13] rstudioapi_0.15.0 vctrs_0.6.5       generics_0.1.3    rmarkdown_2.26   
[17] tools_4.2.2       stringr_1.5.1     glue_1.6.2        purrr_1.0.1      
[21] xfun_0.42         yaml_2.3.8        fastmap_1.1.1     compiler_4.2.2   
[25] timechange_0.3.0  htmltools_0.5.7   knitr_1.45